PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001377.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 738aa    MW: 86238.3 Da    PI: 9.4291
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001377.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.32.2e-1729138190
                            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrt 60 
                                     kfYn YA+  GFs+rksk+++ ++++ +++r++ Csk g + +++++                   ++  rr   +tr+
  FANhyb_rscf00001377.1.g00001.1  29 KFYNYYAHVRGFSTRKSKMYRYRTSDFVYRREWECSKAGVNPKKRRNpvevaekkrpvdiketkrrNHMLRRGYRQTRC 107
                                     6*******************************************999*************7665544445557789*** PP

                            FAR1  61 gCkaklkvkkek.dgkwevtkleleHnHela 90 
                                      C+ak++vk    ++k+ v ++++ HnH+l+
  FANhyb_rscf00001377.1.g00001.1 108 RCTAKFVVKWCLrRKKYFVCEFVTLHNHDLC 138
                                     *********9988*****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-1529138IPR004330FAR1 DNA binding domain
PfamPF105512.3E-30260354IPR018289MULE transposase domain
PROSITE profilePS509669.681539577IPR007527Zinc finger, SWIM-type
PfamPF044346.4E-4551569IPR007527Zinc finger, SWIM-type
SMARTSM005750.0021552579IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
DKFNRLNIRD ITYDDVSDLL FEDYEAAGKF YNYYAHVRGF STRKSKMYRY RTSDFVYRRE  60
WECSKAGVNP KKRRNPVEVA EKKRPVDIKE TKRRNHMLRR GYRQTRCRCT AKFVVKWCLR  120
RKKYFVCEFV TLHNHDLCRP NEVHFLRSHR KVEDHDLAQV QSLNEVQVPI SRAYEFLSYQ  180
AGGYNNMRFT LKDLYNKLGR KNITDNAEGD AQTAVRSLRA RSARETEFFF EHTVDTEGRL  240
KNMFWRDHQS LLDYTAYGDV LIIDSTYKTN RYRQPLVLFV GCNNHRATTV FGFALVGDEK  300
EETYDWVFNM FLVSMKYKKP MSVITDGDEA IKSVLERLMP EARHRLCAWH IGRNIGQNLN  360
NVEAIKCFSK FIYASLTVPE WEAQWREAVE MHQMENNEWV TALYKKRTRW AESFFRGSFY  420
GGMCSTQRCE GMNCQFKKRL DPSTTVSAVY GRLEWKQRRI RDRAQLDNFK VRNSTPVFDT  480
HMRKLEVEAC KTFSHDIFIM IKSQINFGDR FVVHQRFPFP NADAIVFYVG QYDKVERRWS  540
VDYCGNKGNP QWSCSCKMYE SDGIPCAHLF CVFKYELIIE FPTCLINKRW TREVGETTIV  600
PSCVQVQNTS LAKSARYASL LIEAGKACSR YAESPERFNA AMIELEKLKK CSMKYNPTVN  660
EDHTALSESD SVVGDPLKCR TKGTPSKTEQ KRSVITCSNC EGLGHNTRSS KKPRLVPDVC  720
GSGNVVGRQT PALDNSRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-81FAR1-related sequence 5